Bratislava Biocenter

Publications

  • Brejová, B., Hodorová, V., Lichancová, H., Peričková, E., Šoucová, V.A., Sipiczki, M., Vinař, T., & Nosek, J. (2023) Chromosome-level genome assembly of the yeast Candida verbasci. Microbiology Resource Announcements 12(3): e00005-23.
  • Boža, V., Batmendijn, E., Perešíni, P., Hodorová, V., Lichancová, H., Rabatin, R., Brejová, B., Nosek, J., & Vinař, T. (2023) Precise Nanopore Signal Modeling Improves Unsupervised Single-Molecule Methylation Detection. CEUR Workshop Proceedings vol. 3498. Proceedings of the 23rd Conference ITAT (Information technologies – Applications and Theory).
  • Cillingová, A., Tóth, R., Mojáková, A., Zeman, I., Vrzoňová, R., Siváková, B., Baráth, P., Neboháčová, M., Klepcová, Z., Brázdovič, F., Lichancová, H., Hodorová, V., Brejová, B., Vinař, T., Mutalová, S., Vozáriková, V., Mutti, G., Tomáška, Ľ., Gácser, A., Gabaldón, T., & Nosek, J. (2022) Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources. PLoS Genetics 18(3): e1009815.
  • Brejová, B., Hodorová, V., Boršová, K., Čabanová, V., Szemes, T., Mišík, M., Klempa, B., Nosek, J. & Vinař, T. (2021) Sequencing SARS-CoV-2 in Slovakia: An Unofficial Genomic Surveillance Report. CEUR Workshop Proceedings vol. 2962: Proceedings of the ITAT (Information technologies – Applications and Theory) conference, Data Analysis in Response to Epidemics workshop.
  • Boža, V., Fedro, M., Boršová, K., Čabanová, V., Černíková, J., Hodorová, V., Perešíni, P., Sládečková, K., Klempa, B., Nosek, J., Brejová, B. & Vinař, T. (2021) Alternative base callers aid real-time analysis of SARS-CoV-2 sequencing runs. CEUR Workshop Proceedings vol. 2962: Proceedings of the ITAT (Information technologies – Applications and Theory) conference, Data Analysis in Response to Epidemics workshop.
  • Brejová, B., Boršová, K., Hodorová, V., Čabanová, V., Gafurov, A., Fričová, D., Neboháčová, M., Vinař, T., Klempa, B. & Nosek, J. (2021) Nanopore Sequencing of SARS-CoV-2: Comparison of Short and Long PCR-tiling Amplicon Protocols. PLoS One 16(10): e0259277.
  • Brejová, B., Boršová, K., Hodorová, V., Čabanová, V., Reizigová, L., Paul, E.D., Čekan, P., Klempa, B., Nosek, J., & Vinař, T. (2021) A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020. Virus Genes (in press).
  • Hodorová, V., Lichancová, H., Zubenko, S., Sienkiewicz, K., Penir, S.M.U., Afanasyev, P., Boceck, D., Bonnin, S., Hakobyan, S., Smyczynska, U., Zhivkoplias, E., Zlatohurska, M., Tralle, E., Frolova, A., Pryszcz, L.P., Brejová, B., Vinař, T., & Nosek, J. (2019) Genome Sequence of the Yeast Saprochaete ingens CBS 517.90. Microbiology Resource Announcements 8(50): e01366-19.
  • Brejová, B., Lichancová, H., Brázdovič, F., Hegedűsová, E., Forgáčová Jakúbková, M., Hodorová, V., Džugasová, V., Baláž, A., Zeiselová, L., Cillingová, A., Neboháčová, M., Raclavský, V., Tomáška, Ľ., Lang, B.F., Vinař, T., & Nosek, J. (2019) Genome sequence of the opportunistic human pathogen Magnusiomyces capitatus. Current Genetics 65: 539-560.
  • Lichancová, H., Hodorová, V., Sienkiewicz, K., Penir, S.M.U., Afanasyev, P., Boceck, D., Bonnin, S., Hakobyan, S., Krawczyk, P.S., Smyczynska, U., Zhivkoplias, E., Zlatohurska, M., Odrzywolski, A., Tralle, E., Frolova, A., Pryszcz, L.P., Brejová,B., Vinař, T. & Nosek, J. (2019) Genome Sequence of Flavor-Producing Yeast Saprochaete suaveolens NRRL Y-17571. Microbiology Resource Announcements 8(9): e00094-19.
  • Brejová, B., Lichancová, H., Hodorová, V., Neboháčová, M., Tomáška, Ľ., Vinař, T., & Nosek, J. (2019) Genome Sequence of an Arthroconidial Yeast Saprochaete fungicola CBS 625.85. Microbiology Resource Announcements 8(15): e00092-19.

Grants

  • UK/229/2019 - Genome and transcriptome analysis of the pathogenic yeast Saprochaete clavata
  • UK/268/2018 - The yeast Magnusiomyces magnusii as a model system for investigation of the role of calcium cations in dynamics of cell organelles